HsaEX0001845 @ hg19
Exon Skipping
Gene
ENSG00000135847 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:23339]
Coordinates
chr1:180366651-180382606:-
Coord C1 exon
chr1:180382501-180382606
Coord A exon
chr1:180370846-180370915
Coord C2 exon
chr1:180366651-180366740
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTCTGGACAGAAT
3' ss Score
9.23
5' ss Seq
CAGGTTCAG
5' ss Score
2.78
Exon sequences
Seq C1 exon
GGAAGAAGACAAAAATATATTTGATTACTGCAGGGAAAACAACATTGACCATATAACCAAAGCCATCAAATCGAAAAATGTGGATGTGAATGTGAAAGATGAAGAG
Seq A exon
AATTTTGCTCTGTTGCCCATGCTGGAGTACAGTGGCACGATCTCATCTCACTGCAACCTCCACCTCCCAG
Seq C2 exon
GGTAGGGCTCTACTTCACTGGGCCTGTGATCGAGGACATAAGGAACTAGTCACAGTGTTGCTGCAACATAGAGCTGACATTAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135847-'6-9,'6-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(30.1=77.8)
A:
NO
C2:
PF127962=Ank_2=FE(31.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATTACTGCAGGGAAAACAACA
R:
ATGTCAGCTCTATGTTGCAGCA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)