HsaEX0001847 @ hg19
Exon Skipping
Gene
ENSG00000135847 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:23339]
Coordinates
chr1:180250441-180257652:-
Coord C1 exon
chr1:180257405-180257652
Coord A exon
chr1:180256411-180256537
Coord C2 exon
chr1:180250441-180250521
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGAGACAGGGT
3' ss Score
4.19
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
CCTCTGCCTGTGAGTTTCTGGATATTGTAGAGCTGCTGCTCCAGTCTGGTGCTGACCCCACTCTCCGAGACCAGGATGGCTGCCTGCCAGAGGAGGTGACAGGCTGCAAAACAGTTTCTTTGGTGCTGCAGCGGCACACAACTGGCAAGGCTTAATCAAAAGACTGGAAAACTGCAGTCTGTAATAGCATAAGGCTTCCATTATGAAAGAAAACTACAAAAATAATACTTCTTTTCCACCCGTCTTTG
Seq A exon
GGTCTCGCTATGTCACCCAGGCTGAAGTGCAGTGGTATGATCATGGTTCACTACAGCCTCAACCTCCTGGGCTCAAGGAATCCTCCCACCTCAGCCTCCTGTGTAGCTGAGATAGCTGGGACTACAG
Seq C2 exon
CTGAGTAGAATCCTGGGCCCAAGGGGAAAGGACAGGAAAGCAATGGAACACCGACTGCGGAGCTTCCATTTGTTCTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135847_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(24.7=44.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTCCGAGACCAGGATGG
R:
GCAGTCGGTGTTCCATTGCTT
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)