HsaEX0002097 @ hg19
Exon Skipping
Gene
ENSG00000183747 | ACSM2A
Description
acyl-CoA synthetase medium-chain family member 2A [Source:HGNC Symbol;Acc:32017]
Coordinates
chr16:20462898-20471613:+
Coord C1 exon
chr16:20462898-20463003
Coord A exon
chr16:20463703-20463788
Coord C2 exon
chr16:20471429-20471613
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCACTTGAACATCAGACT
3' ss Score
2.5
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GAGTTACTGTGCTCTCTTCCAAGGCTGTAGGAGTTCTGGAGCTGCTGGCTGGAGAGGAGGGTGGACGAAGCTCTCTCTAGAAAGACATCCTGAGAGGACTTGGCAG
Seq A exon
ACTCCAGGTTCTTCAGTTTTGGAACTCAAACTGGCTCTCCTTGCACCTCAGCCTGCAGATGGCCTATTGTGGGACCTTGTGATCAT
Seq C2 exon
GCCTGAATATGCATTGGCTGCGAAAAGTTCAGGGACTTTGCACCCTGTGGGGTACTCAGATGTCCAGCCGCACTCTCTACATTAATAGTAGGCAACTGGTGTCCCTGCAGTGGGGCCACCAGGAAGTGCCGGCCAAGTTTAACTTTGCTAGTGATGTGTTGGATCACTGGGCTGACATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183747_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=3.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTCTCTTCCAAGGCTG
R:
AATGTAGAGAGTGCGGCTGGA
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)