HsaEX0002101 @ hg19
Exon Skipping
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:10522]
Coordinates
chr16:20788695-20792179:+
Coord C1 exon
chr16:20788695-20788902
Coord A exon
chr16:20791119-20791229
Coord C2 exon
chr16:20792036-20792179
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGAGACAGAGT
3' ss Score
3.01
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGACAGTTTTAATTCCAGGAACCACTCAGCTGACCCAGAAAGACATTCTCTACAGACTACAATCTTCAAAAGCAAACTGCATTATCACCAATGATGTTTTAGCCCCAGCAGTAGACGCTGTTGCATCCAAATGTGAAAATCTGCACTCCAAGCTGATTGTATCAGAGAACTCCAGAGAGGGGTGGGGGAACCTCAAGGAGTTGATGAA
Seq A exon
AGTCTTTCTCTGTCACCCAGGCTGGAGTACGGTGGCTCGATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCGATTCTCAGCCTCCTGAGTAGCTGGGATTACAG
Seq C2 exon
ACATGCCAGTGACAGCCACACCTGTGTGAAGACAAAACACAATGAGATCATGGCCATATTCTTTACCAGTGGAACAAGTGGATATCCGAAAATGACTGCACACACCCACAGCAGTTTTGGTTTAGGATTATCTGTAAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(15.9=87.5)
A:
PF0050123=AMP-binding=FE(8.2=100),PF139001=GVQW=PU(57.9=28.9)
C2:
PF0050123=AMP-binding=FE(10.6=100),PF139001=GVQW=PD(36.8=14.3)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATGATGTTTTAGCCCCAGC
R:
AACCAAAACTGCTGTGGGTGT
Band lengths:
243-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)