HsaEX0002195 @ hg19
Exon Skipping
Gene
ENSG00000115170 | ACVR1
Description
activin A receptor, type I [Source:HGNC Symbol;Acc:171]
Coordinates
chr2:158674897-158732374:-
Coord C1 exon
chr2:158732308-158732374
Coord A exon
chr2:158716545-158716691
Coord C2 exon
chr2:158674897-158675071
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTTTATTTTCTTTAGGTG
3' ss Score
10.88
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
CTGCAGCGCCCGGCTGCCTCGCACTCCGCCTCCCCCGGCTCAGCCCCCGGCCGCGGCGGGACCCGAG
Seq A exon
GTGGGCTCAGCCTTCTTTCCTTCAATTCCTGTTTCAGTCTCATTTTCATGGACTGGTCCCCAAACTTGTCTGCATTGGAAGCACCTGGGGAGTTTCTAGACCTGAGCCTGTGCCCACCTCATGAGGTTGTGATTTAATTGGTCTGGG
Seq C2 exon
CCTGGAGCATTGGTAAGCGTCACACTGCCAAAGTGAGAGCTGCTGGAGAACTCATAATCCCAGGAACGCCTCTTCTACTCTCCGAGTACCCCAGTGACCAGAGTGAGAGAAGCTCTGAACGAGGGCACGCGGCTTGAAGGACTGTGGGCAGATGTGACCAAGAGCCTGCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115170_MULTIEX1-1/5=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)