HsaEX0003560 @ hg19
Exon Skipping
Gene
ENSG00000227039 | AL844908.5
Description
NA
Coordinates
chr21:46340966-46346919:+
Coord C1 exon
chr21:46340966-46341242
Coord A exon
chr21:46342828-46342898
Coord C2 exon
chr21:46346783-46346919
Length
71 bp
Sequences
Splice sites
3' ss Seq
AGGGTATCTTCTCATTACAGACT
3' ss Score
5.43
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
CTTGAGACAGGTGGGACATGTCATTTCTCACATGAGGTCCCGGCGAGAAGGACCTGCTTCCATCAGATTCACACTTGGGAGAGGGGCCCGGCCTCCAGGAGCGCCAGGCAGAAAGGGCACCCATTAGGAAGAAGAACACAGAGGCCATGGGAGTGAAAAGTTTGATGCTGGAAAGCAACAGTAGCACATTCTGCTACAGAGCGGAATGAAAAACCCTGGGGAGCAAATTCCTGAGCCAGAGAATGGAGCGGAGGAACCAGCCAAGGAGGATAAAGAG
Seq A exon
ACTTAGCCTAGAAAATAATGAAGAAGGACAGAAAGAGAATACCATTCTACTACACCCGCTGATGACTTAAA
Seq C2 exon
ACCTGCGTGCTCTGAGGCTGCCCGACCCTGAGCTCCAGAACAGACCATCGAGTTCAGGAGACAAGCATGTCAGCCATGACACAAGGCAGATGAGAGGGACCCCCAGCGTCCACACGTGGAGGCAGCGGGGGCAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227039_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAATGAAAAACCCTGGG
R:
TCCCTCTCATCTGCCTTGTGT
Band lengths:
177-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)