HsaEX0004116 @ hg19
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41521177-41523348:-
Coord C1 exon
chr8:41523051-41523348
Coord A exon
chr8:41522323-41522427
Coord C2 exon
chr8:41521177-41521260
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCTGTGCTTTGTGCTAAAGCAC
3' ss Score
4.78
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AGTTTTGGGAGGCTGTACCCCATAAAGGAAGGGTGCAAGGGCCTGTGGGCTGACAGGAATTACAGACCGGCTTCCAGGTGGCCCCACCACCTGTGCTGGGCCCCTGCTGGGCTCACTTGACTGTCCCTGAGCCCATCACTCACCCTTTTGGAGCAATTTTTGAAACAGACCGCTAAGTACCCAGGGTATTAGCTGGTCTCATCCCTACCATGCCGGGGAACAGCATTTGGATCACCGCAGTAGCAGCCCAAGGAGACACACAAGTAGCTGCTTTCTCGGACTGTATTATTTTCTGAAA
Seq A exon
CACATCCACCAGGAGCTGGACAAGGAGCTGGGGGAGAGCGAGGGCCTCAGTGACGACGAGGAGACCATCTCCACCAGGGTGGTCCGGCGGCGGGTCTTCCTGAAG
Seq C2 exon
GGGAATGAGTTTCAGAATATTCCAGGGGAGCAGGTGACAGAGGAGCAATTCACGGATGAGCAGGGCAACATTGTCACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-'49-58,'49-57,50-58
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.110 C2=0.653
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCCATCACTCACCCTTT
R:
ACAATGTTGCCCTGCTCATCC
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)