HsaEX0004121 @ hg19
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2, neuronal [Source:HGNC Symbol;Acc:493]
Coordinates
chr4:113825611-114095673:+
Coord C1 exon
chr4:113825611-113825670
Coord A exon
chr4:114072236-114072280
Coord C2 exon
chr4:114095572-114095673
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGGGAATTTTCCCACTACAGGTG
3' ss Score
6.94
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GTAAGTAATGAAAAGAGACATGAAGAATTGGTATTTCAAATGACCACCATGTTGCAAAAG
Seq A exon
GTGACATGCCCCCAGATGAAACCAGAGGCCGCCAACATTGAAAAG
Seq C2 exon
TCTGACAGCAATGCAAGCTTCCTCCGTGCTGCCAGAGCAGGCAACCTGGACAAAGTTGTGGAATATCTGAAGGGGGGCATAGACATCAATACCTGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362-'2-16,'2-12,10-16
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.510 A=1.000 C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(29.0=79.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTGGTATTTCAAATGACCACCA
R:
GCAGGTATTGATGTCTATGCCCC
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)