HsaEX0004358 @ hg19
Exon Skipping
Gene
ENSG00000180071 | ANKRD18A
Description
ankyrin repeat domain 18A [Source:HGNC Symbol;Acc:23643]
Coordinates
chr9:38611212-38616041:-
Coord C1 exon
chr9:38615927-38616041
Coord A exon
chr9:38615591-38615764
Coord C2 exon
chr9:38611212-38611318
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTTTATCTAACACTAATAGGCT
3' ss Score
5.26
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GACTGTTCTACATTTGGCCTGTGCCCATGGCCGTGTGCAAGTGGTCACTCTCTTGCTGCACAGAAGATGCCAGATCGACATCTGTGACAGACTAAACAGGACACCTTTAATGAAG
Seq A exon
GCTGTACACAGCCAGGAAGAGGCTTGTGCCATCGTTCTCCTGGAATGTGGCGCCAATCCAAACATTGAGGATATCTACGGCAACACTGCTCTCCATTATGCCGTGTATAATAAGGGGACTTCACTGGCAGAAAGACTGCTTTCCCACCATGCAAATATTGAAGCACTAAACAAG
Seq C2 exon
GAGGGAAACACTCCACTTTTGTTTGCTATAAATTCCAGGAGACAGCATATGGTGGAATTTTTATTGAAGAACCAGGCAAATATACATGCCGTTGACAATTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180071_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(37.6=89.7)
A:
PF127962=Ank_2=PD(60.2=96.6),PF127962=Ank_2=PU(5.7=6.9)
C2:
PF127962=Ank_2=FE(50.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCTACATTTGGCCTGTGC
R:
TTTGAAATTGTCAACGGCATGT
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)