HsaEX0004372 @ hg19
Exon Skipping
Gene
ENSG00000186481 | ANKRD20A5
Description
ankyrin repeat domain 20 family, member A5, pseudogene [Source:HGNC Symbol;Acc:33833]
Coordinates
chr18:14208170-14214282:+
Coord C1 exon
chr18:14208170-14208241
Coord A exon
chr18:14211308-14211415
Coord C2 exon
chr18:14214212-14214282
Length
108 bp
Sequences
Splice sites
3' ss Seq
TATGGCTTTCTGTTTTATAGTGT
3' ss Score
8.33
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CCTAGCACTGAAATGGAAGATCCTGCTGTGAAAGGAGCAGTACAAAAAAGAATGTACAGACATTGAGAGCAG
Seq A exon
TGTTGATTTACCCAATACTAATGGGAACCATTGAGCATTTGCCTTGTGGTGTCTCCTCAGCTGTATTCACACATTCCATCACCTTGTCTTAATGGATAATCATGCACT
Seq C2 exon
AACAAGCCTTACCAGTGGCTTCAGAGGAAGAACAGCAAAGGCGTGAAAGAAGTGAAAAGAAGCAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186481_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGAAATGGAAGATCCTGC
R:
TGTGGTTGCTTCTTTTCACTTCT
Band lengths:
138-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)