HsaEX0004374 @ hg38
Exon Skipping
Gene
ENSG00000283294 | RP11-681B3.4
Description
NA
Coordinates
chr18:14183929-14187294:+
Coord C1 exon
chr18:14183929-14184102
Coord A exon
chr18:14186410-14186501
Coord C2 exon
chr18:14187224-14187294
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGGTCTGCTGTGCAGAGG
3' ss Score
6.19
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GCTGTCCATTGCCAGGAAGAGGCTTGTGCCGTTATTCTGCTGGAACATGGTGCCAATCCAAACCTTAAGGATATCTACGGCAACACTGCTCTCCATTATGCTGTGTATAGTGAGAGCACCTCACTGGCAGAAAAACTGCTTTTCCATGGTGAAAATATTGAAGCACTGGACAAG
Seq A exon
AGGTTGCCCCTTTAGAGAAGGCGTGTATTCTCCAGTTTGCTGCTGTGCCCACCTTAGTACTTCCTTTACTCAGGCAACCTTCCTTTGTGCTT
Seq C2 exon
TGACCCATTTGGAGCAGGAGTGCCTGACATTGACATCTGGGATCCTGACACCATTGATAGAAGTGAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283294_MULTIEX1-1/8=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTGCCGTTATTCTGCTG
R:
CACTCCTGCTCCAAATGGGTC
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development