HsaEX0004394 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27382614-27389421:-
Coord C1 exon
chr10:27389014-27389421
Coord A exon
chr10:27387109-27387255
Coord C2 exon
chr10:27382614-27382728
Length
147 bp
Sequences
Splice sites
3' ss Seq
ACAACTTTTATCCTTTTCAGAAG
3' ss Score
8.66
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTCTAGCGGGATCGCTTGCTTGGTAACCCGGAGGGAGAGATTGGAAACCGCGGAGTTTCCTTTGGGAGGCTGCGGCCAGCCGGGGCTGACTTGTTATGTTGGGCTCCGGAGGCCGTTAAGAGCCGAGAGAGACATGAGGTGTCTCTGAAGCCCGGTCGCCTGGGCCATGAAGAAGATTTTTAGTAAGAAGGGCGAGTCGCCCTTGGGCTCCTTCGCGCGGCGGCAGAGGAGCAGCGCGGGAGGCGGGGGCGAGCCGGGGGAGGGCGCCTACTCGCAGCCCGGCTACCACGTCCGAGACCGAGATCTCGGCAAGATCCACAAAGCTGCCAGCGCGGGTAATGTGGCGAAAGTGCAGCAGATCCTTTTGCTCAGGAAGAATGGCTTGAACGATAGAGACAAGATGAACAG
Seq A exon
AAGTAAAGGGGATCTTGGCTGGGCACCTGTGGCTCATGACTGTAATCCCAGCACTTTGGGAGGCCCAGGCAGGAGGATTGCTTGACCCAGGAGTTCGAAACTAGCCTGGGCAACATAGCAAGACCCTGTCTCTATTAAAAATGAAAG
Seq C2 exon
GACGGCTCTACATTTGGCCTGTGCCAATGGTCATCCAGAAGTAGTAACTCTCCTGGTGGACAGAAAATGCCAGCTCAATGTCTGTGACAACGAAAACAGGACAGCTCTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=1.000 C2=0.026
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PU(62.3=40.7),PF0115012=GDA1_CD39=PU(18.9=29.6)
A:
NO
C2:
PF136371=Ank_4=PD(35.8=48.7),PF0115012=GDA1_CD39=FE(29.9=100),PF127962=Ank_2=PU(21.6=41.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGTAAGAAGGGCGAGTCG
R:
CAGGCCAAATGTAGAGCCGTC
Band lengths:
251-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)