HsaEX0004457 @ hg19
Exon Skipping
Gene
ENSG00000224309 | ANKRD30B
Description
ankyrin repeat domain 30B pseudogene 2 [Source:HGNC Symbol;Acc:16620]
Coordinates
chr21:14410481-14417591:+
Coord C1 exon
chr21:14410481-14410745
Coord A exon
chr21:14414823-14414937
Coord C2 exon
chr21:14415100-14417591
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAGGCCTCTCACTCTCGTAGGAC
3' ss Score
6.92
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGGCGAGCAGCGGGAGGCACGGGCTCTCTCTAGCAGGTGGCTGCAGCCATGGAGAGGCTCTGTGCCGCCGCTGTCAAGGGCCAGACGGGCCCAGAGCGCCCAAGCCCCTTCAGTCAGCTGGTCTACACCAACAACGACTCTTACGTGATTCACCATGGGGATCTCAGGAAGATCCACAAAGCTGCCTCCCGGGCCAAGCCTGGAAGCTGGAGAGGATGATGAAGAAGACGACAATGGACCTGAACATAAGAGATGCGAAGAAGAG
Seq A exon
GACTGCTCTACACTGGGCCTGTGCCAATGGCCATGCAGAAGTAGTAACACTTCTGGTAGATAGAAAGTGCCAGCTTGACGTCCTTGATGGCGAAAACAGGACAACTCTGATGAAG
Seq C2 exon
GCTCTGCAATGCCAGAGGGAGGCTTGTGCAAATATTCTCATAGATTCTGGTGCTGATCCAAATATTGTAGATGTGTATGGCAACACAGCTGTCCATTATGCTGTTAACAGTGAGAATTTGTCAGTGGTGGCAAAATTGCTGTCCTGTGGTACAGACATTAAAGTGAAGAACAAGGTAGACATTAACCAATGTTATTTTCAAAATATTTGAAATCCATTTGTTTTAACATTAACATATGTAAATTGTTTTATATTTGGAAGCTCAAACATTCCTATTTTTCTATGAAAATAGTTTGACAAAACTTAATTGTCTAGGATTTTGCTTTAAATATTAATATTTTTACAAGAACTATTAGTATGGCTTTTCTGTGCATTATGATAAATATTTAAATTTGTTAAAGGTAAAACATTTTCAAATATTCTTTCCCACCCAAGTTTTTTTTTTTCTTTCCAGTTAGTGTAAAACTACAAGAAAGTAAAATTTGCCTGCATAAATTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000224309_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTCAGTCAGCTGGTCTA
R:
GGACAGCTGTGTTGCCATACA
Band lengths:
255-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)