HsaEX0004470 @ hg19
Exon Skipping
Gene
ENSG00000164236 | ANKRD33B
Description
ankyrin repeat domain 33B [Source:HGNC Symbol;Acc:35240]
Coordinates
chr5:10618445-10638280:+
Coord C1 exon
chr5:10618445-10618574
Coord A exon
chr5:10619314-10619490
Coord C2 exon
chr5:10638140-10638280
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACATTTCTTTGCCTCCAAAGATT
3' ss Score
7.55
5' ss Seq
ACTGTATGT
5' ss Score
5.19
Exon sequences
Seq C1 exon
ACCGGCCTTATTGTCGCCTGCTACCACGGCTTTGTGGATACCGTGGTGGCCTTAGCAGAGTGCCCCCACGTTGACGTCAACTGGCAGGACAGCGAGGGGAACACAGCCCTAATCACAGCTGCACAGGCAG
Seq A exon
ATTCTGTCTGTTTCATCGGTCAAGTTCTCAGTTGCAAGCAAAGAAGCTGCCTGCAGCTGAGCCAGGAAGAACAGGCGCTTGTGTGTTGAAGGAAGGAGGGGAAGCTTACACGGTTGTCGGGTTGTTGAGAATCCCACTCAGGGCCTGGAAACTGGAGGAAGTGCCCCCGACCACACT
Seq C2 exon
GGCACGCTATCATCACTAACTACTTGTTGAACTATTTCCCTGGTCTTGACCTTGAAAGGAGGAACGCGTTCGGGTTCACCGCCCTGATGAAAGCCGCCATGCAGGGTCGAACGGACTGCATCCGAGCCCTGATGCTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164236-'1-3,'1-1,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.4=100)
A:
PF127962=Ank_2=PD(18.8=60.0)
C2:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0),PF107844=Plasmid_stab_B=PU(46.9=47.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTGTCGCCTGCTACCACG
R:
ATCAGGGCTCGGATGCAGTC
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)