HsaEX0005482 @ hg19
Exon Skipping
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:30207]
Coordinates
chr1:94655482-94667413:-
Coord C1 exon
chr1:94667276-94667413
Coord A exon
chr1:94657269-94657440
Coord C2 exon
chr1:94655482-94655639
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTCACAAAAATCCTATCAAGTTT
3' ss Score
0.02
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTAGAAGAAGCAAATGAACTTTACAAAGTTTGTGTGACAAATGTTGAAGAAAGAAGAAATGATCTAGAAAATACCAAAAGAGAAATTTTAGCACAACTCCGGACACTTGTTTTCCAGTGTGATCTTACCCTTAAAGCT
Seq A exon
TTTTTAGCTCCATTTTACTGATGAGAAAACTAAAGTTTAGAAAGCCTTCTCAAGATGCGGTCCTTGGACCAGTCATATTGCCATTACTTTGAGAGCCTATGAGGAATGCAGAATCTTGGGTTTCAACACAGATCCTTAGAACCATAATCTACATTTGGACAAGATCCCCAAG
Seq C2 exon
GTAACAGTTAACCTCTTCCACATGCAGCATCTGCAGGCTGCTTCCCTTGCAGACAGTTTACAGTCTCTCTGTGATAGTGCCAAACTCTATGACCCAGGCCAAGAGTACAGTGAATTTGTCAAGGCCACAAATTCAACTGAAGAAGAAAAAGTTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962-'12-14,'12-13,14-14
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.302
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGCAAATGAACTTTACAAAG
R:
TGTACTCTTGGCCTGGGTCAT
Band lengths:
245-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)