HsaEX0006494 @ hg19
Exon Skipping
Gene
ENSG00000115966 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:784]
Coordinates
chr2:175991521-175994935:-
Coord C1 exon
chr2:175994866-175994935
Coord A exon
chr2:175991884-175991959
Coord C2 exon
chr2:175991521-175991786
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTCGAGACAGGGT
3' ss Score
4.72
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGTACTGCGCCTGGATGTGGCCAG
Seq A exon
GGTCTCACTCTGTCACCCGGGCTGGAGTGCAGTAGCATGATCATGACACACTGAAGCCTCAACCTCCTGGGCTCAG
Seq C2 exon
GATCTCTCAATGTTGTCCAGGCTGTTCTCAAACTCCTGGGCTCAAGCCATCTGCCTACCTTGGCCTCCCAGTGTGCTGAGATTGTAGACATGAGCCACTTCGCCTGACCCACTTTACTTTTTGGATTTGGTACTGAGTTAAATGGAATGAGAGATAGTATTACTCAAATCATCCATTTTGCTGGCTTGGAGTGAACAAACAACTTGATTCTGTAATCCCTGAAGTACAGCTAATGCAATATGTGTTTCTAGGGCCAGCCTTTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115966-'6-13,'6-12,7-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=PU(34.6=37.5)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATACAAGGACCTGTGGAA
R:
GGCGAAGTGGCTCATGTCTAC
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)