HsaEX0006686 @ hg19
Exon Skipping
Gene
ENSG00000119787 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:24047]
Coordinates
chr2:38542426-38545781:-
Coord C1 exon
chr2:38545677-38545781
Coord A exon
chr2:38544381-38544491
Coord C2 exon
chr2:38542426-38542476
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTACTTTTTCTTTTCTGAGATC
3' ss Score
0.18
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTTGCTGTGCTGCTTATGGATACCCAGGGTGCCTTTGATAGCCAGTCAACTATCAAAGACTGTGCAACGGTGTTTGCTCTGAGCACTATGACTAGCTCTGTCCAG
Seq A exon
ATCATCTGTGGCTGATACATCTCTGAAAAATGAATTATTGAAGTATGGCGGTTAGGCCCAGCTGGTGATGGTGTATCAAGAAGTATATTTGCAAATATTTTTTTAAAATGG
Seq C2 exon
GTATATAATCTGTCTCAGAATATTCAAGAAGATGATCTTCAACATTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119787-'11-10,'11-9,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PU(17.1=96.7)
A:
PF0226314=GBP=PD(1.5=40.0)
C2:
PF0226314=GBP=PD(0.1=0.0),PF0226314=GBP=FE(11.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)