HsaEX0006693 @ hg19
Exon Skipping
Gene
ENSG00000184743 | ATL3
Description
atlastin GTPase 3 [Source:HGNC Symbol;Acc:24526]
Coordinates
chr11:63403006-63403806:-
Coord C1 exon
chr11:63403679-63403806
Coord A exon
chr11:63403319-63403465
Coord C2 exon
chr11:63403006-63403062
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTGCACTCTCTTAGAGG
3' ss Score
7.09
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ATATTGCTGGTGAATTCAAAGAGCAGTTACAGGCACTGATACCGTATGTATTAAACCCATCTAAGTTAATGGAAAAGGAGATCAATGGCTCAAAGGTCACCTGTCGGGGACTACTGGAGTATTTTAAG
Seq A exon
AGGAGCAATTAGCTGTGACTAAAGGAAGATTGTTCCTCAAGGAAGATGGTGTGGACAGGAGGTGGTTAGGAAGTTGCTGTGAGTAGGAGGAGACGGCACCTAGATGTGACACGACTACCTCAAGGCGGATGGTCACTCTGCCCACAG
Seq C2 exon
GCATATATTAAAATTTATCAAGGAGAAGATCTGCCTCACCCCAAGTCCATGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184743-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(9.7=60.5),PF028419=GBP_C=PU(11.0=32.6)
A:
NO
C2:
PF028419=GBP_C=FE(14.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTGAATTCAAAGAGCAGT
R:
GAAGCATGGACTTGGGGTGAG
Band lengths:
179-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)