HsaEX0006696 @ hg19
Exon Skipping
Gene
ENSG00000184743 | ATL3
Description
atlastin GTPase 3 [Source:HGNC Symbol;Acc:24526]
Coordinates
chr11:63413979-63419458:-
Coord C1 exon
chr11:63419408-63419458
Coord A exon
chr11:63415449-63415585
Coord C2 exon
chr11:63413979-63414035
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTGGATTTATCTTCTCCAGATA
3' ss Score
7.72
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
ATTTATAATTTATCTCAGAACATTCAAGAAGATGATCTTCAACAGCTGCAG
Seq A exon
ATAGTACACTTCCCATCTTCTATGGAGGCAGGAAAAATACGGCAGTTAGAGAGGGGTGCCTGGAAGTGTAGGTACTTTCTCCTAAGACTCACATATTTCCTAGTTGTCAGCTGGACTCCTACACCTCCTCCTGTAAG
Seq C2 exon
CTCTTCACAGAATACGGTCGTCTGGCAATGGATGAAATTTTCCAAAAGCCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184743-'7-9,'7-8,8-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.9=100)
A:
PF0226314=GBP=PD(16.8=67.4)
C2:
PF0226314=GBP=FE(6.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGAACATTCAAGAAGATGATCT
R:
AGGCTTTTGGAAAATTTCATCCA
Band lengths:
90-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)