HsaEX0006976 @ hg38
Exon Skipping
Gene
ENSG00000105929 | ATP6V0A4
Description
ATPase H+ transporting V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr7:138771131-138798196:-
Coord C1 exon
chr7:138798034-138798196
Coord A exon
chr7:138786158-138786260
Coord C2 exon
chr7:138771131-138771264
Length
103 bp
Sequences
Splice sites
3' ss Seq
TAAAACTTCATTTTCCTAAGTCT
3' ss Score
3.09
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
ATAACGCTACCTGCCGAGCAAGCCGAGTGGAGGGAGGCAAAGGCCAGGCTGAGGATCAGGGTGGCCCGGGTGGCAGCGGGGAGGCGCTGCATGCTGGAGGCTGTGCTGAGTGCCCGGTGCAGGTGAGCCGGTCCTGCGGAGTTGTGCCGAGTGCCTGCTGCAG
Seq A exon
TCTCATTTCCAGTTCCTCCATGACGTGGCAAGTGAAGACAGGAATGAAAGGAATGTAAAGCAGCTTTTCTCTGAAGAGAAGAAGAGAGAGAGACACAGCCAAG
Seq C2 exon
ACCGAGGCTGGGCCAAGATGGTGTCTGTGTTTCGAAGCGAGGAGATGTGTTTGTCACAACTGTTTCTCCAGGTGGAAGCTGCATATTGCTGTGTGGCTGAGCTCGGAGAGCTCGGATTGGTTCAGTTCAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105929_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0149614=V_ATPase_I=PU(1.6=33.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACGCTACCTGCCGAGCAA
R:
TATGCAGCTTCCACCTGGAGA
Band lengths:
248-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development