HsaEX0007657 @ hg19
Exon Skipping
Gene
ENSG00000117523 | BAT2D1
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903]
Coordinates
chr1:171556142-171557644:+
Coord C1 exon
chr1:171556142-171556360
Coord A exon
chr1:171556787-171556890
Coord C2 exon
chr1:171557518-171557644
Length
104 bp
Sequences
Splice sites
3' ss Seq
TATTTTATGCTTCTCCTCAGATG
3' ss Score
9.4
5' ss Seq
CCGGTAAAA
5' ss Score
6
Exon sequences
Seq C1 exon
GTTACAGTACCTTTACCAGCATCGCAGCTTTCCTTGCCTAATTTTGGATCTACAGGGCAACCTCTAATTGCTTTGCCTCAGACTCTTCAGCCCCCATTACAGCATACCACTCCCCAAGCACAGGCTCAGAGTCTGAGTCGTCCTGCACAAGTAAGCCAGCCTTTCAGAGGATTAATTCCTGCTGGAACACAGCATAGCATGATTGCAACCACAGGAAAA
Seq A exon
ATGTCTGAAATGGAACTAAAAGCCTTTGGAAGTGGCATTGATATAAAACCAGGCACACCTCCAATCGCTGGTAGAAGCACCACACCAACATCTAGTCCCTTCCG
Seq C2 exon
GGCTACTTCTACAAGTCCGAACAGCCAGTCCAGCAAAATGAACAGCATTGTCTACCAGAAGCAGTTCCAGTCAGCCCCTGCCACTGTGAGAATGACACAACCATTTCCTACACAGTTTGCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=0.938 C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCATTACAGCATACCAC
R:
CTGGGGTGCAAACTGTGTAGG
Band lengths:
257-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)