HsaEX0007666 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131483359-131484790:+
Coord C1 exon
chr9:131483359-131483445
Coord A exon
chr9:131483955-131484027
Coord C2 exon
chr9:131484686-131484790
Length
73 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCTCACCACCTGCAGGGG
3' ss Score
9.18
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GACTCCGATTTCAGCTTGCCACCTGGTTCTGCCTCTGGTCCTACTGGGAGTCCAGTTGTTAAACTTCAGGATGCCTTGGCCAGTAAT
Seq A exon
GGGTGGGTGCTAGTGCATATGCTGAATGAACGAGTATCATTTGGGCAGCGTTTCCCAGAGGATTCCAAGGAAT
Seq C2 exon
GCAGGGTTAACACAGAGTATCCCCATCCTGCGGCGGGACCATCACATCCAGAGGGCCATCGGTCTCTCCCCAATGTCCTTCCCCACCGCCGACCTTACTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-'55-68,'55-67,56-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.040 C2=0.473
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000357304fB763
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCGATTTCAGCTTGCCA
R:
GGGAAGGACATTGGGGAGAGA
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development