HsaEX0007669 @ hg19
Exon Skipping
Gene
ENSG00000130723 | BAT2L
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:28121]
Coordinates
chr9:134312007-134314448:+
Coord C1 exon
chr9:134312007-134312109
Coord A exon
chr9:134312233-134312282
Coord C2 exon
chr9:134314376-134314448
Length
50 bp
Sequences
Splice sites
3' ss Seq
GCATGACCTGTCTATTCCAGAGG
3' ss Score
6.59
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTCCAGTGCGACGGCCTCTCAGCCGCCGGAGTCGCTGCCGCAGCCGGGTTTGCAGAAATCTGTCTCCAATTTGCAGAAACCGACACAGTCAATCAGTCAGGAG
Seq A exon
AGGCACACCCGATGAGTGACTTTAGAAAACCGTCATGGGAAACCGTCAAG
Seq C2 exon
AATACAAATTCAGTGCCAGGTGGACCAAAGTCATGGGCACAGCTGAATGGAAAGCCAGTAGGACACGAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF070016=BAT2_N=FE(17.5=100)
A:
PF070016=BAT2_N=PD(2.2=60.0)
C2:
PF070016=BAT2_N=FE(12.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGGGTTTGCAGAAATCTG
R:
ACCTTCGTGTCCTACTGGCTT
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)