HsaEX0007744 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160472753-160527321:-
Coord C1 exon
chr2:160527219-160527321
Coord A exon
chr2:160491696-160491834
Coord C2 exon
chr2:160472753-160473112
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTCTTACTCTGTAAAAGTAGCAA
3' ss Score
-0.17
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACCTATACTACAAGAAATGATAATGGAAGTTCTTCAACTGAGCAAGAAATGATATTAACAGAAAACTTGGATCTTCAGAAGCAAATGAAGAACATCAGAAATG
Seq A exon
CAACAGCTGCTGAGAAGAGATGACTAAAAGCTGAAAAGTGAAGAATTAACACTGATTTCTTGGCAGAAGCAGAAGCTTCAGGACTCCTGAATTGAGGGAATGATCTAAATTCCAAGGATTATCTCTCAGTGAGAACAAG
Seq C2 exon
CAACTTTCATTGTTAGAGAGAGGAGAGAGAGAGAAGCCTTGTTGGTTGACGTCACTTGGTTCATGAAGCCTTCGCCTAGAAGTGAAGCTGCTGAACAAACCTTGAGAAGAATCATCTCCTGCTTCAATCTGCTGCTGGATAGGAACTAATCAGAGAGAGAGAGGCGGAAGACGGAGAAGGAGGGAGTCGAAGGCTTTCCCGATCACAAATCTCACCTCCACTACAACTCTCTTTATACTTTTCTTGCAGAAATAATAATAGAAATAAGGAGGTGGTGGGGTTTCCAAAAATCTTAACCTTCAACCATCTGGGGAAAAGGCAAAAATCCCATCTACCGCAACTCTCAGTTCGAGAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636_MULTIEX2-2/2=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTTCTTCAACTGAGCA
R:
GTCTTCCGCCTCTCTCTCTCT
Band lengths:
252-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)