HsaEX0009487 @ hg19
Exon Skipping
Gene
ENSG00000156030 | C14orf43
Description
chromosome 14 open reading frame 43 [Source:HGNC Symbol;Acc:19853]
Coordinates
chr14:74205263-74256662:-
Coord C1 exon
chr14:74256528-74256662
Coord A exon
chr14:74254730-74254852
Coord C2 exon
chr14:74205263-74206958
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTCACCAGCAA
3' ss Score
8.76
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACAAAGCCCTGACTCCACAGCCACTGTTTGGGCCAAGCCCTCAGGGATCAGGGTAAATGCCTGGAGGAGGAGGAAGAGGATGCCTGGACAGATGTCAATTCTGGTGACACAAAGACATCTGTATGTGCTGTCAG
Seq A exon
CAAAGGCTAACCCCGTTTTTTCTCCAGCCTTATGAGATCAGGAGTTCTTCCTTGAAGACTGCTGTTTAACGACTTGGTTGCTACTTATCTTAAAGGTGGCTTTCCGTTGTACTTTTTAATAAG
Seq C2 exon
GTGCCAGAACCCTGTGGAGCATCATGAACTGGGAAGAGTAGCTGAGCCCCAGAGCCTCTCTGGAAGAGAAAGGAAGAGCCAGCAGTTCTTTCTCCCAGTGTCCGACCTCACTGTCCAGCGTCTTCCTCTGCCCCTGCTCTGCCCTCCCTGGCTCCTGGACTAGAGCCCGGCTTCCAGCAGGACGTTTCCCCAGGGGATGGGCGACTGTTGAAGGGGATCTCACCGCCAGGGCTCAGTTGGCCACATCATGAACCTCCAGGCCCAGCCCAAGGCTCAGAACAAGCGGAAGCGTTGCCTCTTCGGGGGCCAGGAACCAGCTCCCAAGGAGCAGCCCCCTCCCCTGCAGCCCCCCCAGCAGTCCATCAGAGTGAAGGAGGAGCAGTACCTCGGGCACGAGGGTCCAGGAGGGGCAGTCTCCACCTCTCAGCCTGTGGAACTGCCCCCTCCTAGCAGCCTGGCCCTGCTGAACTCTGTGGTATATGGGCCTGAGCGGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156030_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.965
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAGCCCTGACTCCACAG
R:
GGTCGGACACTGGGAGAAAGA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)