HsaEX0009928 @ hg19
Exon Skipping
Gene
ENSG00000177025 | C19orf18
Description
chromosome 19 open reading frame 18 [Source:HGNC Symbol;Acc:28642]
Coordinates
chr19:58469805-58478000:-
Coord C1 exon
chr19:58477898-58478000
Coord A exon
chr19:58472759-58472919
Coord C2 exon
chr19:58469805-58470085
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCATTTATATCATTCTCCAGTCG
3' ss Score
7.04
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
CAATAATTCGGCATAGACCTGCTCTTGTTAAAGTAATTTTAATTTCGAGCGTAGCCTTCAGCATTGCCCTGATATGTGGGATGGCAATCTCCTATATGATATA
Seq A exon
TCGACTGGCACAGGCTGAGGAAAGACAACAGCTCGAGTCACTTTATAAGAACCTCAGGATACCGTTATTAGGAGATGAAGAAGAGGGCTCAGAGGACGAGGGTGAGTCCACGCACCTACTTCCAGAGAACGAAAATGAGCTGGAAAAGTTCATCCACTCAG
Seq C2 exon
TTATTATATCAAAAAGAAGCAAAAATATTAAGAAGAAACTGAAGGAAGAGCAAAACTCAGTAACAGAAAACAAAACAAAGAATGCGTCACATAATGGAAAAATGGAAGACTTGTGAACGCAGACGACAGAGGTGCCGGCTGAGGCAGAGGAGAAACTATGGGGGTGCTGGGAGACTGAGCCTGTGGGCGTGGCTTGCTCCCAGAGAACCTTATGGAAGAGGACATCAAAGAAAGAAATGCCAGACCTGTATCCCAGAAAATAAAGCCACATGATATAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177025-'4-6,'4-5,6-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.345 C2=0.684
Domain overlap (PFAM):
C1:
PF097165=ETRAMP=FE(26.6=100),PF111393=DUF2910=FE(30.4=100)
A:
PF097165=ETRAMP=PD(4.7=10.9),PF111393=DUF2910=PD(17.9=36.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCATAGACCTGCTCTTGT
R:
AGTTTCTCCTCTGCCTCAGCC
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)