HsaEX0011566 @ hg38
Exon Skipping
Gene
ENSG00000213563 | C8orf82
Description
chromosome 8 open reading frame 82 [Source:HGNC Symbol;Acc:HGNC:33826]
Coordinates
chr8:144528024-144529132:-
Coord C1 exon
chr8:144528761-144529132
Coord A exon
chr8:144528268-144528435
Coord C2 exon
chr8:144528024-144528072
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGACTTCTCGCCGCTGCCAGGGA
3' ss Score
6.68
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCGGGGCGGACCGGAAGGGGCGTCACCGGCACACGCCTCTCGGAAGGCCAGGGCGGGCGAGCCCCCGAGGCCCGAGGGAGAGGGAAGAGCGCCGGGCCCGGGTCGCGGAGGCGGGCGCCGCCGGAACGCGAAGCGCGGGGCTACTGCGGGCAGGCGCGAGTTCGCGCAGCACCGCCCCCGGCGTGACCTGCTGGTCGCTTCCGGCGCGGGAGGAGAATGTGGCCGCCTTGCGGGACGCTCCGGACCCTGGCCTTGGCGCGGTCGCGGGGAGCCCGGGCCTGCAGCGGGGATGGGGGCGTTTCCTACACGCAGGGCCAGAGTCCGGAGCCGCGGACCCGCGAGTATTTCTACTACGTGGACCACCAGGGCCAG
Seq A exon
GGAGACACCCGGGCCGCCCTGCCTTTTTTTGGAAGCCCTGTCAAAAGGCAGCTGCATGTCCGGGAGGCAGCAGGCCAGGTAGTCTCCGCGGAGGAGGTGGTACAACTGATTACAAACTTGAAAAGAGGGAAAAGGTGCGGGAAAGAATTGGCTGACCAGGGAGCAGAG
Seq C2 exon
CTTTTCCTGGATGATTCCAAAATGAAGAATTTCATCACCTGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213563_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.030 C2=0.042
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(54.3=48.1)
A:
PF149561=DUF4505=PD(15.6=8.9),PF149561=DUF4505=PU(4.2=12.5)
C2:
PF149561=DUF4505=FE(8.7=100)
Main Inclusion Isoform:
ENST00000524821fB1211
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTGGTCGCTTCCG
R:
TTGAAGCAGGTGATGAAATTCTTCA
Band lengths:
234-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development