HsaEX0011567 @ hg19
Exon Skipping
Gene
ENSG00000213563 | C8orf82
Description
chromosome 8 open reading frame 82 [Source:HGNC Symbol;Acc:33826]
Coordinates
chr8:145753408-145754458:-
Coord C1 exon
chr8:145754145-145754458
Coord A exon
chr8:145753652-145753855
Coord C2 exon
chr8:145753408-145753456
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTCGGACTCTGTCCTACAAGTCC
3' ss Score
1.62
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAGCCCCCGAGGCCCGAGGGAGAGGGAAGAGCGCCGGGCCCGGGTCGCGGAGGCGGGCGCCGCCGGAACGCGAAGCGCGGGGCTACTGCGGGCAGGCGCGAGTTCGCGCAGCACCGCCCCCGGCGTGACCTGCTGGTCGCTTCCGGCGCGGGAGGAGAATGTGGCCGCCTTGCGGGACGCTCCGGACCCTGGCCTTGGCGCGGTCGCGGGGAGCCCGGGCCTGCAGCGGGGATGGGGGCGTTTCCTACACGCAGGGCCAGAGTCCGGAGCCGCGGACCCGCGAGTATTTCTACTACGTGGACCACCAGGGCCAG
Seq A exon
TCCCCAGCCCCGGCGCTGACTTCTCGCCGCTGCCAGGGAGACACCCGGGCCGCCCTGCCTTTTTTTGGAAGCCCTGTCAAAAGGCAGCTGCATGTCCGGGAGGCAGCAGGCCAGGTAGTCTCCGCGGAGGAGGTGGTACAACTGATTACAAACTTGAAAAGAGGGAAAAGGTGCGGGAAAGAATTGGCTGACCAGGGAGCAGAG
Seq C2 exon
CTTTTCCTGGATGATTCCAAAATGAAGAATTTCATCACCTGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213563_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF149561=DUF4505=PU(54.3=48.1)
A:
PF149561=DUF4505=PU(4.2=7.2)
C2:
PF149561=DUF4505=FE(8.7=100)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGGAAGAGCGCCGG
R:
GAAGCAGGTGATGAAATTCTTCA
Band lengths:
340-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)