HsaEX0011617 @ hg19
Exon Skipping
Gene
ENSG00000173611 | C9orf126
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:26709]
Coordinates
chr9:127818155-127904956:-
Coord C1 exon
chr9:127904912-127904956
Coord A exon
chr9:127828269-127828337
Coord C2 exon
chr9:127818155-127818286
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTATTCAATACAGTAT
3' ss Score
6.19
5' ss Seq
AAAGTATGA
5' ss Score
3.87
Exon sequences
Seq C1 exon
ACTGACTGGCACAGTGGAGAAACCGCCTCGAAAACGGAGAAGCAG
Seq A exon
TATCAGAGGTTCTGGTGATAGCAGTCATTCACAATCTCAAGGGGAAAGATATCAACATTTCACTGAAAA
Seq C2 exon
GACTGAATTTGCTCTTAAAGAAATCATGTCCTCTGGAGGTGCTGAAGATGATATCCCACAGGGAGAGAGGAAAACAGTTACAGATTTTTGTTATCTTCTGGATAAATCTAAGCAACTGTTCAATGGGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.787 C2=0.200
Domain overlap (PFAM):
C1:
PF135671=DUF4131=FE(18.5=100)
A:
NO
C2:
PF120703=DUF3550=PU(2.8=31.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAGTGGAGAAACCG
R:
ACCCATTGAACAGTTGCTTAGA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)