HsaEX0011619 @ hg19
Exon Skipping
Gene
ENSG00000173611 | C9orf126
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:26709]
Coordinates
chr9:127791923-127818286:-
Coord C1 exon
chr9:127818155-127818286
Coord A exon
chr9:127814725-127814874
Coord C2 exon
chr9:127791923-127792018
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTTTTGCTCTTGTCCCCCAGGCT
3' ss Score
9.67
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
GACTGAATTTGCTCTTAAAGAAATCATGTCCTCTGGAGGTGCTGAAGATGATATCCCACAGGGAGAGAGGAAAACAGTTACAGATTTTTGTTATCTTCTGGATAAATCTAAGCAACTGTTCAATGGGTTAAG
Seq A exon
GCTGGAGTGTGATGGTGCGATCTTGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCCAAGCGATTCTCCTGCCTCCAAGCGATTCTCCTGCCTCGGCACCCACCGCCCCCCTACCCCGAGTAGCTGGGATTACAG
Seq C2 exon
AGATTTGCCACAATATGGACAGAAGCAGTGGCAGTCCTATTTTGGAAGAACTTTTGATGTTTACACCAAACTCTGGAAGTTCCAGCAGCAGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.200 A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PU(2.8=31.1)
A:
PF139001=GVQW=PU(80.9=74.5),PF120703=DUF3550=PU(0.6=5.9)
C2:
PF139001=GVQW=PD(17.0=24.2),PF120703=DUF3550=FE(6.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTAAAGAAATCATGTCCTCTGG
R:
CGATGCTGCTGCTGGAACTTC
Band lengths:
218-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)