HsaEX0011794 @ hg19
Exon Skipping
Gene
ENSG00000165695 | C9orf98
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:26526]
Coordinates
chr9:135704032-135730312:-
Coord C1 exon
chr9:135730244-135730312
Coord A exon
chr9:135727304-135727395
Coord C2 exon
chr9:135704032-135704113
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTGTTTTTACCAGTTG
3' ss Score
10.07
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ACAGTTCCCAGCGCGCTGCTCGTCCAGCTGATTCAGGAACGCCTGGCTGAAGAGGATTGCATCAAGCAG
Seq A exon
TTGGAAGTTTCTTGTAATAGCCGCTTTCGAGTTTTCATCCGCTAATTCCAGTATCTGAGTTACGTGGTGGTGACATCTGTATCTGCTCTCAT
Seq C2 exon
GGCTGGATTCTGGATGGCATCCCTGAGACGCGTGAGCAGGCTCTGAGGATCCAGACCCTGGGGATCACACCCAGACACGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165695_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132071=AAA_17=FE(25.0=100)
A:
PF132071=AAA_17=PD(12.5=73.3)
C2:
PF0040617=ADK=FE(15.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCAGCTGATTCAGGAACG
R:
TGACGTGTCTGGGTGTGATCC
Band lengths:
131-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)