HsaEX0012838 @ hg19
Exon Skipping
Gene
ENSG00000171097 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:1564]
Coordinates
chr9:131596019-131597681:-
Coord C1 exon
chr9:131597602-131597681
Coord A exon
chr9:131596695-131596793
Coord C2 exon
chr9:131596019-131596105
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTCTAACTTGCACAGAGA
3' ss Score
6.61
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
AGAGGAAGATGCCTGACTTGCCTGGAGCTGTGGATGAGCCCTATGACAGACGCTTCGTCAAGTGGATGATCAAGAACAAG
Seq A exon
AGATGCTGTGTGGGCTGGCAGGATTTCCTGCCTCTTTGGATCTCCATCTTCCCATCTGTACAGTGAGGAGTTGGCCCATTAACTCTTGAGTTCATCCAG
Seq C2 exon
GGCTTGGTGGCCATCCCTGTCTCCATCTTCTATAGTGTGCCACATCAGAAGCACTTTGACCACTATATCCGCTTCTGTTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-'26-32,'26-31,28-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=PD(7.2=92.6)
A:
NO
C2:
PF0015516=Aminotran_1_2=FE(7.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAGATGCCTGACTTGC
R:
CTTCACAAAACAGAAGCGGAT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)