HsaEX0013051 @ hg19
Exon Skipping
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:29072]
Coordinates
chr17:16623831-16631054:+
Coord C1 exon
chr17:16623831-16623972
Coord A exon
chr17:16630374-16630453
Coord C2 exon
chr17:16630841-16631054
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTGGTTGTTTCAGGCA
3' ss Score
9.68
5' ss Seq
CTGGCAAGA
5' ss Score
1.69
Exon sequences
Seq C1 exon
GTCAAAAACCAAATATATCCTGAGGCTGACTTTGCTGACTCAATGGAGCCATCTGAAATAGCCTCAGAGGATTGTGAATTGTCTCACTCTGTTTATGAGAATTTTATGTTGCTGATTGAACAACTTAGAATGGAGTATAAAG
Seq A exon
GCAAGAAGGTAAATCAGTACTTGCTGTCCATTGTGGCCAGAAGCAGATTCCAGCAGAGCTTCAGCACCTGCTGTCGACTG
Seq C2 exon
ATTCTGCTAGCCTACCAAGAATCCAAGACACATTTTGTTTGTGTGAACACTTACTGAAACTTAAGAATAATCACTGTGACCAACTTACAGTAAAACTTAAACAAATGGAAAATATGGTCAGTGTACTACAAAATGAGCTATCTGAAACAAAAAAGACAAAATTACAGTTAGAACTTCAAAAAATTGAATGGGAGAAAGAGCTGTACGATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160-'16-23,'16-22,17-23
Average complexity
S
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGCTGACTTTGCTGAC
R:
CACAAACAAAATGTGTCTTGGATTCT
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)