HsaEX0013760 @ hg19
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:30375]
Coordinates
chr12:7581408-7585332:-
Coord C1 exon
chr12:7585012-7585332
Coord A exon
chr12:7582802-7582984
Coord C2 exon
chr12:7581408-7581453
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTTTATGTTTGGAATTTCAGGAA
3' ss Score
7.03
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGAAGCCAATCTGGGTTTGAGGCTAGTGGATGGAAACAACTCCTGTTCAGGGAGAGTGGAGGTGAAATTCCAAGAAAGGTGGGGAACTATATGTGATGATGGGTGGAACTTGAATACTGCTGCCGTGGTGTGCAGGCAACTAGGATGTCCATCTTCTTTTATTTCTTCTGGAGTTGTTAATAGCCCTGCTGTATTGCGCCCCATTTGGCTGGATGACATTTTATGCCAGGGGAATGAGTTGGCACTCTGGAATTGCAGACATCGTGGATGGGGAAATCATGACTGCAGTCACAATGAGGATGTCACATTAACTTGTTATG
Seq A exon
GAAGATACAAAGTTCTTTAATTTCTAAGTGATCTGTCTCTTACTGGCTGACAGAGTTCTTACAACAAGTGAATAATCTGAAAGAACTTAAAGTCTTGGAGTAGTTCAAAGTCAGGAAGAGTACTTAGAACCTTCTGTAAAGTCTTCTAATTTCTTCTATTTTTTCTTCTACAAACATCTACAG
Seq C2 exon
CTACCTGGGATCTGTGAAAGGAACATCAGCAGCAGAATTAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675-'4-4,'4-3,5-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAATACTGCTGCCGTGGT
R:
TGCTGCTGATGTTCCTTTCACA
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)