HsaEX0013885 @ hg38
Exon Skipping
Gene
ENSG00000196352 | CD55
Description
CD55 molecule (Cromer blood group) [Source:HGNC Symbol;Acc:HGNC:2665]
Coordinates
chr1:207321508-207322567:+
Coord C1 exon
chr1:207321508-207321865
Coord A exon
chr1:207322236-207322289
Coord C2 exon
chr1:207322382-207322567
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCGTTCCCCACTCTCGACAGAGT
3' ss Score
7.76
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GAGTCTAGGGCCCCCGGGGCGTATGACGCCGGAGCCCTCTGACCGCACCTCTGACCACAACAAACCCCTACTCCACCCGTCTTGTTTGTCCCACCCTTGGTGACGCAGAGCCCCAGCCCAGACCCCGCCCAAAGCACTCATTTAACTGGTATTGCGGAGCCACGAGGCTTCTGCTTACTGCAACTCGCTCCGGCCGCTGGGCGTAGCTGCGACTCGGCGGAGTCCCGGCGGCGCGTCCTTGTTCTAACCCGGCGCGCCATGACCGTCGCGCGGCCGAGCGTGCCCGCGGCGCTGCCCCTCCTCGGGGAGCTGCCCCGGCTGCTGCTGCTGGTGCTGTTGTGCCTGCCGGCCGTGTGGG
Seq A exon
AGTCCAGCCGTGTGGAGCACACGATGCTGCAAACTTGCATGTCATCTCTTTCAG
Seq C2 exon
GTGACTGTGGCCTTCCCCCAGATGTACCTAATGCCCAGCCAGCTTTGGAAGGCCGTACAAGTTTTCCCGAGGATACTGTAATAACGTACAAATGTGAAGAAAGCTTTGTGAAAATTCCTGGCGAGAAGGACTCAGTGATCTGCCTTAAGGGCAGTCAATGGTCAGATATTGAAGAGTTCTGCAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196352_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008415=Sushi=WD(100=93.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTGTTCTAACCCGGCG
R:
ATCTGGGGGAAGGCCACAG
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development