HsaEX0014081 @ hg19
Exon Skipping
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:29829]
Coordinates
chr11:64609285-64612041:-
Coord C1 exon
chr11:64611882-64612041
Coord A exon
chr11:64611388-64611555
Coord C2 exon
chr11:64609285-64609376
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACAGATTTCCTTGCTTACAGGCC
3' ss Score
7.28
5' ss Seq
TCTGTAGGT
5' ss Score
2.49
Exon sequences
Seq C1 exon
ATGGAGCGGCGGCTGCGCGCGCTGGAGCAGCTGGCGCGGGGCGAGGCCGGCGGCTGCCCGGGGCTCGACGGCCTCCTAGATCTGCTGCTGGCGCTGCACCACGAGCTCAGCAGCGGCCCCCTACGGCGGGAGCGCAGCGTGGCGCAGTTCCTGAGCTGGG
Seq A exon
GCCACACCTGACGCAGGACACACACAGACCCTCATGCATGTCACCCACTGATACACGGGCTCTGTTTCTCCTTCCTCTCGGATGCATTGAGACACACAACTCATGGAGAGACCCAGGGAGCGCTGCAGACCACCCCGACCGCATTGGCACTGCAAAACACACAGATCT
Seq C2 exon
CCAGCCCCTTCGTATCAAAGGTGAAAGAACTGCGTCTGCAGAGAGATGACTTTGAGATCTTGAAGGTGATCGGCCGAGGAGCCTTTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006920=Pkinase=PU(4.9=41.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGACGGCCTCCTAGATCTG
R:
TCCCCAAAGGCTCCTCGG
Band lengths:
188-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)