HsaEX0014666 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121074863-121088543:+
Coord C1 exon
chr9:121074863-121075067
Coord A exon
chr9:121080306-121080478
Coord C2 exon
chr9:121088296-121088543
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTGTCTGTTTTTTAGAGA
3' ss Score
10.46
5' ss Seq
TTGGTGCGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GGGAAACGCCTCCGCGTCCCTTCCAACAGTACCGGAGAGGGAGAGGGGCGTGGCTGAGACTAGCCCCGACCACGCGCGCGCGGCCCCTCGGCAACCGGCACAACACAACAAAATGGCTGCCGCGCCGCTGGGCCCCTGAGGAAAGAGCCCGAACTTCTCCCGCTCTACCTCAGCCTGCGGGACTGCTCGGCTCGGCTTCTAGGCG
Seq A exon
AGACAGGGGCTCCCTGTGTTTCCCAGGCTGCAGTGCAGTGGCCAGTCACAAGGTTGATCATAGCACATTGTAGCCTGGAGCTCCTGGGATCAAGCAATCCTCCTGCCTCATCCTCTGGAGTAACTGGGACTGCAAGTATACATACCGTGCCTGACGAAATATCACAATATTTG
Seq C2 exon
GTTTTGATGAACACCTGGCTTTATTCTTGCAATGAAGAAAGGTTCTCAACAAAAAATATTCTCCAAAGCAAAGATACCATCATCATCTCACTCTCCTATCCCATCATCTATGTCCAATATGAGATCTAGGTCACTTTCACCTTTGATTGGATCAGAGACTCTACCTTTTCATTCTGGAGGACAGTGGTGTGAGCAAGTTGAGATTGCAGATGAAAACAATATGCTTTTGGACTATCAAGACCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX6-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.274
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACTTCTCCCGCTCTACCT
R:
CTCACACCACTGTCCTCCAGA
Band lengths:
249-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development