HsaEX0014804 @ hg19
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:180017671-180022301:+
Coord C1 exon
chr1:180017671-180017840
Coord A exon
chr1:180021359-180021451
Coord C2 exon
chr1:180022105-180022301
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTCTTTTTTTAAGAGA
3' ss Score
8.65
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
AAGTAGCAGTGGTAGCAGCCGCCAAGAAAGTCCTTCAGTTCCATCTTGTAAGGAAAATGAGAAGAAACTTAATGGTGAAAAGATAGAGAGTTCCATTGATGAACAGGTTCAGACTGCTGCAGATGATTCTCTACGAAGTGATAGTGTTCCATCTCTTCCTGATGAAAAAG
Seq A exon
AGACGGGGTCTTGCTCTGTCACCCAGGCTGGTCTCGAACTCCTGGCCTCAAGGGATCCTCCCACCTTGGCATCCCAAAATGCTGGAATTACAG
Seq C2 exon
ACTCAACGTCTATTGCAACAGAATATTCTCTGAAATTTGATGAATCCATGACAGAAGATGAAATAGAAGAACAATCATTTCGATCATTACTACCTTCAGAGAGTCACCGCAGATTTAACATGGAAAAGAGAAGAGGTCATCATGATGACTCTGATGAAGAAGCTTCTCCAGAAAAAACTACACTGTCTACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGTTCAGACTGCTGCAG
R:
TGCGGTGACTCTCTGAAGGTA
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)