HsaEX0015245 @ hg19
Exon Skipping
Gene
ENSG00000128656 | CHN1
Description
chimerin (chimaerin) 1 [Source:HGNC Symbol;Acc:1943]
Coordinates
chr2:175809616-175816930:-
Coord C1 exon
chr2:175816892-175816930
Coord A exon
chr2:175809898-175809989
Coord C2 exon
chr2:175809616-175809671
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATTATTGGTTTATATCATAGACA
3' ss Score
4.59
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATACAGATGAATATAGACCTCCTGTTTGGAAATCTTACT
Seq A exon
ACATCCTTTAATATCCCCACAAAGAACTGGGGAAAATAAATGACCAGATTATGGAGAACAGAGCCAAATATCCAGCACTGACTTGTTATAAG
Seq C2 exon
TATATCAGCTACAACAGGAAGCCCCTCATCCTCGAAGAATTACCTGTACTTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128656_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAGATGAATATAGACCTCCTGTT
R:
CTCGCAAGTACAGGTAATTCTTCGA
Band lengths:
95-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)