HsaEX0015247 @ hg19
Exon Skipping
Gene
ENSG00000128656 | CHN1
Description
chimerin (chimaerin) 1 [Source:HGNC Symbol;Acc:1943]
Coordinates
chr2:175783262-175809671:-
Coord C1 exon
chr2:175809616-175809671
Coord A exon
chr2:175805544-175805622
Coord C2 exon
chr2:175783262-175783293
Length
79 bp
Sequences
Splice sites
3' ss Seq
GCACTAATGATTGACTCCAGGCA
3' ss Score
3.66
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TATATCAGCTACAACAGGAAGCCCCTCATCCTCGAAGAATTACCTGTACTTGCGAG
Seq A exon
GCAAGGATCATCAGTCATTGGATGTTAAAACCATTGGAAGAAAGGCTGTAGGTGAACAGGATATTTACATGGTCTCAAG
Seq C2 exon
GTGGAAAACAGACCAAAGTATTATGGAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128656_MULTIEX2-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCAGCTACAACAGGAAGCCC
R:
TCTCTTCCATAATACTTTGGTCTGT
Band lengths:
87-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)