HsaEX0015345 @ hg19
Exon Skipping
Gene
ENSG00000183196 | CHST6
Description
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 [Source:HGNC Symbol;Acc:6938]
Coordinates
chr16:75505673-75515789:-
Coord C1 exon
chr16:75515715-75515789
Coord A exon
chr16:75512431-75513742
Coord C2 exon
chr16:75505673-75507365
Length
1312 bp
Sequences
Splice sites
3' ss Seq
GCTGCGCTCTCCTCCCTAAGGCC
3' ss Score
6.67
5' ss Seq
GTGGTACGA
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTGCTGAGGAACCTCTAATCATCTCCCATGGATTTGTGATCAGCGTTGCAGCTCTCCCAGCAGCCCTGGACAGTG
Seq A exon
GCCCCCAGCAGTCAGCATGTGGCTGCCGCGCGTCTCCAGCACAGCAGTGACCGCGCTCCTCCTGGCGCAGACCTTCCTCCTCCTCTTTCTGGTTTCCCGGCCAGGGCCCTCGTCCCCAGCAGGCGGCGAGGCGCGCGTGCATGTGCTGGTGCTGTCCTCGTGGCGCTCGGGCTCGTCCTTCGTGGGCCAACTCTTCAACCAGCACCCCGACGTCTTCTACCTAATGGAGCCCGCGTGGCACGTGTGGACCACCCTGTCGCAGGGCAGCGCCGCAACGCTGCACATGGCTGTGCGCGACCTGGTGCGCTCCGTCTTCCTGTGCGACATGGACGTGTTTGATGCCTATCTGCCTTGGCGCCGCAACCTGTCCGACCTCTTCCAGTGGGCCGTGAGCCGTGCACTGTGCTCGCCACCCGCCTGCAGTGCCTTTCCCCGAGGCGCCATCAGCAGCGAGGCCGTGTGCAAGCCACTGTGCGCGCGGCAGTCCTTCACCCTGGCCCGGGAGGCCTGCCGCTCCTACAGCCACGTGGTGCTCAAGGAGGTGCGCTTCTTCAACCTGCAGGTGCTCTACCCGCTGCTCAGCGACCCCGCGCTCAACCTACGCATCGTGCACCTGGTGCGCGACCCGCGGGCCGTGCTGCGCTCCCGGGAGCAGACAGCCAAGGCTCTGGCGCGTGACAACGGCATCGTGCTGGGCACCAACGGCACGTGGGTGGAGGCCGACCCCGGCCTGCGCGTGGTGCGCGAGGTGTGCCGTAGCCACGTACGCATCGCCGAGGCCGCCACACTCAAGCCGCCACCCTTTCTGCGCGGCCGCTACCGCCTGGTGCGCTTCGAGGACCTGGCGCGGGAGCCGCTGGCAGAAATCCGTGCGCTCTACGCCTTCACTGGGCTCAGTCTCACGCCACAGCTCGAGGCCTGGATCCATAACATCACCCACGGATCTGGACCTGGTGCGCGCCGCGAAGCCTTCAAGACTTCGTCCAGGAATGCGCTCAACGTCTCCCAGGCCTGGCGCCATGCGCTGCCCTTTGCCAAGATCCGCCGCGTGCAGGAACTGTGCGCTGGTGCGCTGCAGCTGCTGGGCTACCGGCCTGTGTACTCTGAGGACGAGCAGCGCAACCTCGCCCTTGATCTGGTGCTGCCACGAGGCCTGAACGGCTTCACTTGGGCATCATCCACCGCCTCGCACCCCCGAAATTAGTGGAGGCCACAGTTGTAGCAGGCGCTAGGCCCGGGAGGAGAGTGCATGGTGCAGAGGGGGCTGGGGCGCACGGAGAAGCAGGTCCCTATATTGACCAAGGAGTTTGTG
Seq C2 exon
AGAACCTGCGTGCTGCTCCTTTGCTTCGGACCTCCGCCTCTGCCCGGGAGAAAGCCCAGGCCAGCCTGCTGGACAAGCAGAGACCATGAGAAGGAGAGTTCAGGGGTCCCAAACCAGGCCATCCTAGACCAGCCAGCTCCAGCTGATCCGCACGCAGCCACTTCGGCTACCTTCTACTGGCCAAAGGGAGTCCCAGGGCTCACCCAGATTCAGAGGTGGGGAAACTGAGTCCACCACTTGAGAAGAGTAGCTATAAAGACATATGAGCGAGGCCAGCTGAGCCCAGCACTGCGGCCAAGTCGAAGACTTTAGGAGCAATAAAAGTGCTTATTGTGTTTCAGTCATTTGAGTGTTGTGGTGGTTTGTTACGTAGCATTGCCTAACCGATACACTTGAGAACGGAGGGCTCCTGGCACCTGCAGCTTCCAATTTCCACCAGGGTCCAGGCTCCCTCCCTGCTGGTAGGGCTGTAATTAGTGTCTCCCCTTACCTGTAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183196_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0068522=Sulfotransfer_1=WD(100=80.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTGATCAGCGTTGCAGC
R:
GTCTTCGACTTGGCCGCAG
Band lengths:
351-1663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)