HsaEX0015486 @ hg19
Exon Skipping
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33673784-33686395:-
Coord C1 exon
chr3:33686249-33686395
Coord A exon
chr3:33681361-33681635
Coord C2 exon
chr3:33673784-33673866
Length
275 bp
Sequences
Splice sites
3' ss Seq
CTTATTATTTTGTTTTTCAGCTT
3' ss Score
9.32
5' ss Seq
CGGGTAATC
5' ss Score
4.59
Exon sequences
Seq C1 exon
ATAAAAGCTTCGATGATGAAGAATCAGTGGATGGAAATAGGCCATCATCAGCTGCATCAGCCTTCAAGGTTCCTGCACCTAAAACATCCGGAAATCCTGCCAACAGTGCAAGGAAGCCTGGTTCAGCAGGTGGCCCTAAGGTTGGAG
Seq A exon
CTTTCTGTGAAACCAAGTAACACTTCTGTGTTTTGGTTTTGGTTTCTTCCTCTCTTCTTCCCTTACTGAAGAAGATACTAAAACTCAGAAGATTTTCACCTTAAAGGGGCGTTAAAGATTATCTGACCCAGATTCAGGAAAAGAGATTGAGCCTCAGAGCATTGAATGATGTGCCCAAGATCACATGGTTATTAGTAACCATCTAATGAGATGAGATGAGACGAGAACTCAGTGCTTGACCCACTGTCAGGGGCTTCCTCTTGGATCATCTCCGG
Seq C2 exon
CAGGTGCTTCTAAGGAAGGAGGTGCTGGAGCAGTTGATGAAGATGATTTTATAAAAGCTTTTACAGATGTCCCTTCTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539-'16-27,'16-24,18-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.820
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAAGAATCAGTGGATGGAA
R:
TAGAAGGGACATCTGTAAAAGCTT
Band lengths:
212-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)