HsaEX0015488 @ hg38
Exon Skipping
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr3:33608567-33612071:-
Coord C1 exon
chr3:33612001-33612071
Coord A exon
chr3:33610910-33611078
Coord C2 exon
chr3:33608567-33608626
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCCTTAATGGCCTTCCTCAGCTC
3' ss Score
5.58
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
CATACTCATGTACCCAGACTTATACCTTTAATAACAAGCAATTGCACATCAAAATCAGTTCCCGTGAGGAG
Seq A exon
CTCCATTTGTCAAGTGTATGTGTATGTGTGTGTGTTGTAACACAAATGACTTCATTTTGATTCTGACAACTTCACACCACTATCGCCAACAATAATAAAGACAGGAAAAACAAGATTTGTACATTTGATGTTTAAGAAGATTGTAAAGAACTCTGCCTTTTTAAATTAG
Seq C2 exon
ACGTTCATTTGAATTTTTAGATTTATTGTTGCAAGAGTGGCAGACTCATTCATTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(10.6=100),PF123333=Ipi1_N=FE(29.9=100)
A:
PF123483=CLASP_N=PD(5.9=64.3)
C2:
PF123483=CLASP_N=FE(9.2=100),PF123333=Ipi1_N=FE(26.0=100)
Main Inclusion Isoform:
ENST00000359576fB1651
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACTCATGTACCCAGACTTATACC
R:
TTTCCAATGAATGAGTCTGCCACT
Band lengths:
130-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development