HsaEX0015496 @ hg19
Exon Skipping
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33602300-33612282:-
Coord C1 exon
chr3:33612219-33612282
Coord A exon
chr3:33605456-33605458
Coord C2 exon
chr3:33602300-33602463
Length
3 bp
Sequences
Splice sites
3' ss Seq
TTGAATAGTAAATTCTATAGAGA
3' ss Score
-1.15
5' ss Seq
AGAGTCACA
5' ss Score
-16.73
Exon sequences
Seq C1 exon
TCGAGTTGAACTGAAAAGATTATGTGAAATTTTCACAAGAATGTTTGCTGACCCTCATGGCAAG
Seq A exon
AGA
Seq C2 exon
GTATTCAGCATGTTTTTGGAGACTCTAGTGGATTTCATACAAGTCCACAAAGATGATCTTCAAGATTGGTTGTTTGTACTGCTGACACAACTACTAAAAAAAATGGGTGCTGATTTGCTTGGATCTGTTCAGGCAAAAGTTCAGAAAGCCCTTGATGTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.069
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.3=100),PF116403=TAN=FE(28.0=100)
A:
NO
C2:
PF123483=CLASP_N=FE(23.8=100),PF116403=TAN=PD(18.7=25.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTGACCCTCATGGCAAG
R:
TGTCAGCAGTACAAACAACCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)