HsaEX0015662 @ hg19
Exon Skipping
Gene
ENSG00000130779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:10461]
Coordinates
chr12:122864915-122907135:-
Coord C1 exon
chr12:122907068-122907135
Coord A exon
chr12:122891303-122891472
Coord C2 exon
chr12:122864915-122865105
Length
170 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTTTTTTGCAGATG
3' ss Score
12.35
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGCGGCGGCCGCGGCGGCTGCTGCTGCTGCAGTGGGACAGGTGGCGGCGACCGGCGGCGTCCGAGGAG
Seq A exon
ATGGAGGAACATTGGGAGGCTCTTTATTTTCTGCGTGCTAAGTAGTAGGAATATAAATCTGCACTCAGACTGAGCTGTGCAAAGGCATTCATAATTGCAGGCAGTTGCATCAGAGCTCAGAGTTCCATCTCTAAAAAAAACATTGTCTTATGCCCCAACCTTCTCCCTGG
Seq C2 exon
ATTTAATCCAGAGACTGACTTCACTATAGAACCCACAGTTGTATCAATGGTTGGGGAAAGATAGTGGCAACAGGCAAAGGAGAAACAGCTCTGACATACAAAGAAAATGAGTATGCTAAAGCCAAGTGGGCTTAAGGCCCCCACCAAGATCCTGAAGCCTGGAAGCACAGCTCTGAAGACACCTACGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779-'0-3,'0-1,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.207
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGCAGTGGGACAG
R:
CGTAGGTGTCTTCAGAGCTGTG
Band lengths:
234-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)