HsaEX0015674 @ hg19
Exon Skipping
Gene
ENSG00000106665 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586]
Coordinates
chr7:73790217-73795193:+
Coord C1 exon
chr7:73790217-73791152
Coord A exon
chr7:73791791-73791965
Coord C2 exon
chr7:73795136-73795193
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCTACCCCTTCTTCCTTCAGCTG
3' ss Score
10.66
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCCAGCAGAAGGAGATCGGCGAGCTGAAGGCAGTGATGGAGGGCATCAAGATGGAGCACCAGCTGGAGCTGGGTAACTTGCAGGCCAAGCATGACCTGGAGACCGCCATGCACGTGAAGGAGAAGGAGGCCCTGCGAGAGAAGCTGCAGGAGGCCCAGGAGGAGCTGGCTGGGCTGCAGCGGCACTGGCGGGCCCAGCTGGAGGTGCAAGCCAGCCAGCACCGGCTGGAGCTGCAGGAGGCCCAGGACCAGCGCCGGGATGCCGAGCTGCGTGTGCACGAGCTGGAAAAACTGGACGTGGAGTACCGGGGCCAGGCGCAGGCTATCGAGTTCCTCAAGGAGCAGATCTCGCTGGCCGAGAAGAAGATGTTGGACTACGAGCGGCTGCAGCGGGCAGAAGCCCAGGGCAAACAGGAGGTCGAGAGTTTGCGGGAGAAGCTCCTGGTGGCTGAGAACAGACTCCAGGCGGTCGAGGCCCTGTGCTCCTCCCAGCACACCCAC
Seq A exon
CTGAACCCATCCTCCCAGCCCCTCTGAGGAGGTCAACACCCAGGTGGGCTGTGCCCACTCCACCAGGGCCAGGAAGGGCCTTTTGAGTGGCTCTGGGTACCACGTCTTATGCCAGGCCCTATGTGACTCCATTTCACCTTAACATCCTTAGATTGATACTGGCTCCATTTCACAG
Seq C2 exon
ATGATTGAGTCGAATGACATTTCAGAGGAGACGATCAGGACGAAGGAAACTGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665-'16-21,'16-19,17-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=1.000 C2=0.720
Domain overlap (PFAM):
C1:
PF116003=CAF-1_p150=PD(11.6=7.1),PF093685=Sas10=WD(100=19.6),PF0017016=bZIP_1=WD(100=19.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGGACGTGGAGTACCG
R:
CGTCCTGATCGTCTCCTCTGA
Band lengths:
256-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)