HsaEX0016089 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17415964-17457713:+
Coord C1 exon
chr9:17415964-17416187
Coord A exon
chr9:17444195-17444244
Coord C2 exon
chr9:17457522-17457713
Length
50 bp
Sequences
Splice sites
3' ss Seq
CTCACATCTCTTCATTCCAGACC
3' ss Score
8.79
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
TCAACAGAGAAAAGTACAAAAATATAACTGCCCAGAAATCAAGTAGCAATATTATTTTATTACGAGAACGGATTATATCCTTGCAACAACAAAACAGTGTACTTCAGAATGCCAAGAAAACAGCAGAATTGTCTGTTAAAGAATATAAAGAAGTTAATGAAAAGCTCCTCCATCAACAGCAAGTATCCGATCAACGATTTCAGACAAGCAGGCAGACAATAAAG
Seq A exon
ACCAGACCAGCTTTCTCCATGCAGCTCTGGCCATGCGTATTGGCCATGTG
Seq C2 exon
AAGCTAAATTTGGATTTGGCTGGGCTTCGGAAAGAAAAAGAAGATTTACTAAAGAAATTGGAGTCCTCATCTGAAATCACAAGTTTGGCAGAAGAAAATTCCCAGGTAACATTTCCACGGATACAAGTTACATCACTTAGTCCTTCAAGGAGCATGGATTTGGAAATGAAGCAATTGCAGTATAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGACAAGCAGGCAGACAA
R:
CCGTGGAAATGTTACCTGGGA
Band lengths:
146-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)