HsaEX0016170 @ hg19
Exon Skipping
Gene
ENSG00000100473 | COCH
Description
coagulation factor C homolog, cochlin (Limulus polyphemus) [Source:HGNC Symbol;Acc:2180]
Coordinates
chr14:31353759-31354826:+
Coord C1 exon
chr14:31353759-31353862
Coord A exon
chr14:31354116-31354247
Coord C2 exon
chr14:31354600-31354826
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCATACATTGGATTGACTAGATA
3' ss Score
1.97
5' ss Seq
GAGGTACTA
5' ss Score
6.36
Exon sequences
Seq C1 exon
TGAACATCCCAAAATAGAATTTTACTTGAAAAACTTTACATCAGCCAAAGATGTTTTGTTTGCCATAAAGGAAGTAGGTTTCAGAGGGGGTAATTCCAATACAG
Seq A exon
ATATAACATTGGAGAAGTATCTCTTTGTAATGCTAAAAAGAAGTGAAAATCAACAGACTTATCTAATGAATGCAGATGTGGCAGAAAGAATGAGTAGCACTACCGTTGACTCTGAAGAGAGACTTCTTAGAG
Seq C2 exon
GAAAAGCCTTGAAGCATACTGCTCAGAAATTCTTCACGGTAGATGCTGGAGTAAGAAAAGGGATCCCCAAAGTGGTGGTGGTATTTATTGATGGTTGGCCTTCTGATGACATCGAGGAAGCAGGCATTGTGGCCAGAGAGTTTGGTGTCAATGTATTTATAGTTTCTGTGGCCAAGCCTATCCCTGAAGAACTGGGGATGGTTCAGGATGTCACATTTGTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100473_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(21.5=100)
A:
PF0009223=VWA=PD(45.3=95.6),PF0009223=VWA=PU(20.2=46.7)
C2:
PF0009223=VWA=PD(47.1=94.7)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTAGGTTTCAGAGGGGGT
R:
ACATCCTGAACCATCCCCAGT
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)