HsaEX0016514 @ hg19
Exon Skipping
Gene
ENSG00000172752 | COL29A1
Description
collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:26674]
Coordinates
chr3:130190526-130203688:+
Coord C1 exon
chr3:130190526-130190770
Coord A exon
chr3:130195881-130195983
Coord C2 exon
chr3:130202879-130203688
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGTACTTTGTCTTTTTGCAGATA
3' ss Score
11.57
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ACTTCTTCCTGGGATATATGAAATAAAGACAGAAAATGGTGATCTGTTTGATGAATTTGATTCCCAGGCACAACATCTCCTTGTATTAGGGAACAATCATAGTAGTGGTTCTGAGACAGCTACTGATTTGATGCAGAAGTTATATCTGCTCTTTTCAACTGAGAAACTGGCAATGAAAGACAAGGAAAAAGCACATTTAGAAGAAATTTCAGCTCTAGTGGTTGATAAACAGCAAGAAAAAGAAG
Seq A exon
ATAAGGAAATGGAAGCTACAGACATCTGAAGCATCTTACCTAAGAATTCAGTAATTAATCCAATACTTTCGTCATAGTGATTCATACTCTATGTTTATAGAAC
Seq C2 exon
ATGGTGAAGATACAAGGTCATCATAGGAGAAAAGAAGATAGCTCCACTGACATGTATAATCCCATGTGGTTCTAACCAGAATGTATAATCATCTGTTAGAGGTACTGTGGTAAATGACAGGGACTTTTCACAAAAACAATTGGCTAATAGCATGCTAAATTTGTTCTCCATCTCAAATCTTGAGGAGAAGAATTTTCGGAGTGAAGACATCAGTAAGAAGACCTGACAAACCAGGAATGATTTCATTTCTCCTGAGAACTGGGGAAACCGACCTATAAGAGTTAACTTTTCTTTGAAAGCTCTGCACAGTTCAGGCATCAATTTTGATGATGTATCTGCCTGTAAAAGATTGTCATTATTTTCAACACATCTGTATCTCAGATTGGACTCCTCTAAAAGCATTTGGAATTGGAATTTCCTAGGAATATCTTCTACTAATTCTTAAAACTGGAAAGCCATGCCCATGTCATCGGTTCTGGGGTGACCCTAACATTTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172752_MULTIEX2-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=1.000 C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGCACAACATCTCCTTG
R:
TGGGATTATACATGTCAGTGGAGC
Band lengths:
247-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)