HsaEX0017099 @ hg19
Exon Skipping
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:26977]
Coordinates
chr10:125530432-125539771:-
Coord C1 exon
chr10:125539683-125539771
Coord A exon
chr10:125536140-125536264
Coord C2 exon
chr10:125530432-125530555
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTGAACTTCTGTATTCACAGAAT
3' ss Score
6.8
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCCTAATAATTATTATCACCGCCGGAACGAGATGACCACCACTGATGACCTGGATTTTAAGCACCACAATTATAAGGAAATGCGCCAG
Seq A exon
AATTCCTACGGTTTTGATGAGAGGATAGTTACATCTTGGCCCTGTGTTTCTCAGCGAATATTGGATCATTAGCCATTTTCCATGCTGTCTTCATAATTGTGATTGTGAGGTTGCAGAATGTTCTG
Seq C2 exon
TTGATGAAAGTTGTGAATGAAATGTGTCCCAATATCACCAGAATTTACAACATTGGAAAAAGCCACCAGGGCCTGAAGCTGTATGCTGTGGAGATCTCAGATCACCCTGGGGAGCATGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(0.6=6.7)
A:
NO
C2:
PF0024619=Peptidase_M14=FE(13.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAATAATTATTATCACCGCCGGA
R:
GACTTCATGCTCCCCAGGGT
Band lengths:
211-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)